PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF005100030CFD_t1
Common NameTRAES_3BF005100030CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 351aa    MW: 37705.8 Da    PI: 7.1233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF005100030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY279e-09127147222
                              --SS-EEEEEEE--TT-SS-E CS
                     WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                              +Dgy+WrKYGqK +  + fpr
  TRAES3BF005100030CFD_t1 127 SDGYQWRKYGQKRIMRTSFPR 147
                              7*******************9 PP

2WRKY56.36.4e-18156222259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE......-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver......saedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK +  + fpr YYrC ++   +Cp++k v++      s+ d+++ ++tY  eH+++
  TRAES3BF005100030CFD_t1 156 SDGYQWRKYGQKRIMRTSFPRCYYRCCYHrerSCPATKLVQQqppqqhSDGDQTMYTVTYVHEHTCH 222
                              7**************************998999*******86333222567899**********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-7116147IPR003657WRKY domain
SuperFamilySSF1182904.45E-7120147IPR003657WRKY domain
PROSITE profilePS508118.777121147IPR003657WRKY domain
PfamPF031063.8E-6128148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-19149223IPR003657WRKY domain
SuperFamilySSF1182907.85E-18149222IPR003657WRKY domain
PROSITE profilePS5081115.032150222IPR003657WRKY domain
SMARTSM007744.9E-25155223IPR003657WRKY domain
PfamPF031062.6E-20157222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQTQSRLIMN PNGGVTGYEP AATDEQHEAV LRELAHGHEL TAHLQAEALR ALHGQGQTEA  60
TAALILQEVS RAFTVCINIM GGSAPAATPT TPPPDAAGVV VTGAASARRP RDDGVPRKVT  120
VTSSPYSDGY QWRKYGQKRI MRTSFPRVTV TSSPYSDGYQ WRKYGQKRIM RTSFPRCYYR  180
CCYHRERSCP ATKLVQQQPP QQHSDGDQTM YTVTYVHEHT CHNMAPAEPE AAARSSTPDP  240
LGFSAGMQPR QQQRGGAGLD RGSKEELERQ ALVSSLACVL QGHHQSYTGS GAGTPDGSPS  300
QGRVGDGPSA SGLSLDTSDD LGLDVMDYGV TDALYFAASS SYGPGGDGMI P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S4W20.0A0A077S4W2_WHEAT; Uncharacterized protein
STRINGMLOC_3853.11e-101(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-10WRKY DNA-binding protein 54
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]